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Please use this identifier to cite or link to this item: http://ntour.ntou.edu.tw:8080/ir/handle/987654321/40217

Title: BiMFG : Bioinformatics Tools for Marine and Freshwater Species
Authors: Shih TH
Chen CM
Wang HW
Pai TW
Chang HT.
Contributors: 國立臺灣海洋大學:資訊工程學系
Date: 2010
Issue Date: 2017-01-16T06:13:14Z
Publisher: J Bioinform Comput Biol
Abstract: Abstract
Biomolecule sequences and structures of land, air and water species are determined rapidly and the data entries are unevenly distributed for different organisms. It frequently leads to the BLAST results of homologous search containing undesirable entries from organisms living in different environments. To reduce irrelevant searching results, a separate database for comparative genomics is urgently required. A comprehensive bioinformatics tool set and an integrated database, named Bioinformatics tools for Marine and Freshwater Genomics (BiMFG), are constructed for comparative analyses among model species and underwater species. Novel matching techniques based on conserved motifs and/or secondary structure elements are designed for efficiently and effectively retrieving and aligning remote sequences through cross-species comparisons. It is especially helpful when sequences under analysis possess low similarities and unresolved structural information. In addition, the system provides core techniques of multiple sequence alignment, multiple second structure profile alignment and iteratively refined multiple structural alignments for biodiversity analysis and verification in marine and freshwater biology.
Relation: 8(1)
URI: http://ntour.ntou.edu.tw:8080/ir/handle/987654321/40217
Appears in Collections:[資訊工程學系] 期刊論文

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