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Please use this identifier to cite or link to this item: http://ntour.ntou.edu.tw:8080/ir/handle/987654321/28206

Title: Optimal Prediction Strategy for DNA Sequence Promoter Based on Genetic Algorithm
Authors: Cheng-Fa Cheng;Yi-Ren Chen;Ming-Zong Ye
Contributors: NTOU:Department of Communications Navigation and Control Engineering
國立臺灣海洋大學:通訊與導航工程學系
Keywords: Bioinformatics;Promoter Prediction;ScoreM ethod;Genetic Algorithm
Date: 2005-11-18
Issue Date: 2011-10-21T02:36:13Z
Publisher: 2005 Automatic Control Conference
Abstract: Abstract:As a result of the Human Genome Project (HGP, 2001) and International Rice Genome Sequencing Project (IRGSP, 2002), nucleic acid and protein sequences data are accumulated at an exponential rate, more and more relative valued databases are developed. Techniques and tools are needed to identify biologically relevant features in these huge amount sequences and to provide insight into their structures and functions. This paper investigates an optimization method for promoter sequences prediction based on score model and genetic algorithm. First, a simple, fast and sensitive model for identifying and predicting promoter sequences which have non-random statistical properties and therefore biologically active has been developed. Then in some limit for previously Score Method we will supply a new Genetic-based Score Method which has more sensitive and can make good recognition rate for more common situation. That is, an optimization processing for the promoter prediction by genetic algorithm is proposed. The proposed real-valued genetic algorithm is composing of real-valued crossover and mutation operators constructed with the information of real number field and objective function. Simulation results are included to demonstrate the proposed idea.
URI: http://ntour.ntou.edu.tw/handle/987654321/28206
Appears in Collections:[通訊與導航工程學系] 演講及研討會

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